PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10435905g0020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 592aa    MW: 65854.5 Da    PI: 5.1777
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10435905g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.2e-13400445454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RR+++N++f eLr ++P+       K++Ka+ L  A  YIk+L
  MA_10435905g0020 400 NHVEAERQRREKLNQKFYELRAVVPNV-----SKMDKASLLGDAAAYIKDL 445
                       799***********************6.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-5319209IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.49E-17395462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.015396445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-12399445No hitNo description
PfamPF000103.1E-10400445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-18400466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-16402451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MDTLMASSVV DQRFSQETLQ QRLQTLVETA SIVWTYAIFW QVSYESSGAI QLCWGDGYYK  60
GSRNTEEDER LRMRSRLTVS PADQELRKKV LRDLHSMISG SDEGNQQDNS SVSVDEEVTD  120
AEWFYLISMM QSFLSGFGVP GTAFSTGAPV WIVGAERLRV STCDRARQAH DLGIQTLVCV  180
PIQGGVVEFG STEDIVENWL FLEQVNRSFK YNLNQTHDNL FQVQSLWPEE TLSVKSSNTM  240
QSAPCIEPVN NAEIQSLNSA LARELPVTGK QKASVFAEQS SLVVKDDKSL LHPLTQQTEA  300
LEAPAIRIPE TVNGTEPQTR ALGFKGSEKN VIKPSIKEDT IGLLSNPPGI VIGGLRSSIE  360
SELSDAEPSA SIKDSTSAVV ERKPRKRGRK PANGREEPLN HVEAERQRRE KLNQKFYELR  420
AVVPNVSKMD KASLLGDAAA YIKDLCSKQQ DLESERVELQ DQIESVKKEL LMNSLKLAAK  480
EATDLSSIDL KGFSQGKFPG LNSEVRILGR EAIIRIQCTK HNHPVARLMT ALQELDLEVL  540
HASISTVKDS LIIQTVIVKM TRGLYTEEQL HALLXQVMDC SRIVLEFALV SA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-47132123195Transcription factor MYC3
4rqw_B1e-47132123195Transcription factor MYC3
4rs9_A1e-47132123195Transcription factor MYC3
4yz6_A1e-47132123195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381389RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6767390.0EF676739.1 Picea sitchensis clone WS02750_B15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LLU30.0B8LLU3_PICSI; Putative uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37331224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-132bHLH family protein